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bioNMF Results


bioNMF 2.0 - Main Menu

Job's parameters:
Job's ID: NMF_example
Analysis method: Standard NMF
Input file format: ASCII-text
Data matrix has numeric column-headers: No
Data matrix has numeric row-labels: No
Transpose data matrix: No
Normalization method: Do not normalize
Method to make data positive: Exponential scaling
Initial values of output matrices W and H: Selected randomly
NMF algorithm: Standard NMF
Range of factorization ranks: [2...5]
Number of runs per rank: 5
Number of iterations per run: 2000
Stopping threshold: 40 iteration(s)
Save option: Save all matrices

NMF results:
Best factorization rank:4
Best run (0-based indexing):0
Distance between input matrix and W*H: 1.2872122e-05
Cophenetic Correlation Coefficient(s)
Heatmap of input matrix Profile plot of input matrix
   
Matrix W Matrix H
Matrix W (numeric data) Matrix H (numeric data)
Heatmap of matrix W Heatmap of matrix H
Profile plot of matrix W Profile plot of matrix H

Supplemental matrices:
Run 0: Matrix W
Matrix W (numeric data)
Matrix H
Matrix H (numeric data)
Run 1: Matrix W
Matrix W (numeric data)
Matrix H
Matrix H (numeric data)
Run 2: Matrix W
Matrix W (numeric data)
Matrix H
Matrix H (numeric data)
Run 3: Matrix W
Matrix W (numeric data)
Matrix H
Matrix H (numeric data)
Run 4: Matrix W
Matrix W (numeric data)
Matrix H
Matrix H (numeric data)

Output log (detailed information and timings).

bioNMF 2.0 - Main Menu